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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_143864012_143864723_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
143864012 - 143864723
Intron Length:
712

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGTAT
5'SS Class:
strong_major
3'SS Sequence:
TCTGGTACATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
AGTACTTTATTT
Flanking Amino Acid:
FNVGSEKTRVGLAQYSGDPR
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
84.7
28.2
Major BPS
75.1
0.62
1
65.6
41
Major PPT
62.3
0.28
1
60.5
40.3
Minor 5ss
38.4
-1.3
3.4
55
49.2
Minor BPS
57.2
0.3
1.6
71.77
39.5

Associated Gene:

Gene:
COL14A1
Ensembl Gene ID:
ENSAPLG00000008273
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020981
143824288 - 143950114
125827
ENSAPLT00000008884
143824288 - 143949881
125594
ENSAPLT00000047738
143824288 - 143950242
125955
ENSAPLT00000036897
143824288 - 143950242
125955