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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_143872890_143875232_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
143872890 - 143875232
Intron Length:
2343

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGATGTAC
5'SS Class:
major
3'SS Sequence:
TTGGTGTTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCTTTTTTATTC
Flanking Amino Acid:
TEGLAADEKEIKIGEASTEL
Intron Amino Acid Position:
488

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
68
33
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
74.1
0.54
1
65.8
45.3
Minor 5ss
31.6
-2.1
3.2
40.7
45.8
Minor BPS
61.1
0.33
1.5
68.82
37.9

Associated Gene:

Gene:
COL14A1
Ensembl Gene ID:
ENSAPLG00000008273
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020981
143824288 - 143950114
125827
ENSAPLT00000008884
143824288 - 143949881
125594
ENSAPLT00000047738
143824288 - 143950242
125955
ENSAPLT00000036897
143824288 - 143950242
125955