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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_143906459_143906674_F

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
143906459 - 143906674
Intron Length:
216

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACACTAT
5'SS Class:
major
3'SS Sequence:
TGGTGCCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTAAATTAATA
Flanking Amino Acid:
LVTKDGNNFAGFKMMEMFGL
Intron Amino Acid Position:
1237

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1.1
68.4
39.2
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
72.8
0.51
1
62.3
44.3
Minor 5ss
43.8
-0.7
3.3
64.2
47.3
Minor BPS
59.4
0.29
1.8
74.76
36.2

Associated Gene:

Gene:
COL14A1
Ensembl Gene ID:
ENSAPLG00000008273
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047738
143824288 - 143950242
125955
ENSAPLT00000036897
143824288 - 143950242
125955
ENSAPLT00000020981
143824288 - 143950114
125827
ENSAPLT00000008884
143824288 - 143949881
125594