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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_143906814_143909224_F

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
143906814 - 143909224
Intron Length:
2411

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTCTT
5'SS Class:
major
3'SS Sequence:
ACTTCTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ACTTCTTTTACA
Flanking Amino Acid:
HKDALVSQPTKYLHPEGLPS
Intron Amino Acid Position:
1283

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
77.2
37.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
85.8
0.81
0.8
79.9
31.4
Minor 5ss
48
-0.2
2.8
67.6
37.2
Minor BPS
66.8
0.52
1.6
73.19
38.6

Associated Gene:

Gene:
COL14A1
Ensembl Gene ID:
ENSAPLG00000008273
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036897
143824288 - 143950242
125955
ENSAPLT00000020981
143824288 - 143950114
125827
ENSAPLT00000008884
143824288 - 143949881
125594
ENSAPLT00000047738
143824288 - 143950242
125955