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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_143909368_143910809_F

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
143909368 - 143910809
Intron Length:
1442

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTATGTATT
5'SS Class:
major
3'SS Sequence:
TATTTTCTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTTATTT
Flanking Amino Acid:
YEPLVGVILDNGGKTLTFFN
Intron Amino Acid Position:
1331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1
77.6
36.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.4
0.8
0.7
80.4
31.3
Minor 5ss
50
-0
2.5
74.1
35.5
Minor BPS
64.7
0.54
1.5
79.8
36.8

Associated Gene:

Gene:
COL14A1
Ensembl Gene ID:
ENSAPLG00000008273
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020981
143824288 - 143950114
125827
ENSAPLT00000008884
143824288 - 143949881
125594
ENSAPLT00000047738
143824288 - 143950242
125955
ENSAPLT00000036897
143824288 - 143950242
125955