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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_143912706_143918282_F

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
143912706 - 143918282
Intron Length:
5577

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTAGA
5'SS Class:
major
3'SS Sequence:
TGTTTTAAAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTGTTTTAAAA
Flanking Amino Acid:
SRGPRDNSVPLQLQMFDIVC
Intron Amino Acid Position:
1421

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1
68.2
38.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
71.3
0.48
1
67.6
41.7
Minor 5ss
31.8
-2.1
2.7
38.9
40.3
Minor BPS
66.3
0.51
1.5
75.65
35.9

Associated Gene:

Gene:
COL14A1
Ensembl Gene ID:
ENSAPLG00000008273
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020981
143824288 - 143950114
125827
ENSAPLT00000008884
143824288 - 143949881
125594
ENSAPLT00000047738
143824288 - 143950242
125955
ENSAPLT00000036897
143824288 - 143950242
125955