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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_143918361_143918645_F

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
143918361 - 143918645
Intron Length:
285

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
GATCTTTCCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
CTATCTTGATCT
Flanking Amino Acid:
RDKCCELPGLRDEENCPALP
Intron Amino Acid Position:
1447

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
76.9
31.6
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
72
0.49
0.8
70
36.1
Minor 5ss
33.9
-1.8
2.9
40.8
39.5
Minor BPS
55.7
0.26
1.8
73.48
43.4

Associated Gene:

Gene:
COL14A1
Ensembl Gene ID:
ENSAPLG00000008273
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047738
143824288 - 143950242
125955
ENSAPLT00000036897
143824288 - 143950242
125955
ENSAPLT00000020981
143824288 - 143950114
125827
ENSAPLT00000008884
143824288 - 143949881
125594