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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_143918733_143922339_F

Intron Information:

Intron Rank:
36
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
143918733 - 143922339
Intron Length:
3607

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
TTGTGCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
TTTTCAGCAAAT
Flanking Amino Acid:
KGPLGPPGPPGGPGVRGAKG
Intron Amino Acid Position:
1476

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
79.9
36
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
82.7
0.74
0.9
76.3
37.8
Minor 5ss
43.1
-0.8
3.4
65.3
45.9
Minor BPS
47.5
-0.1
2.5
79.14
42.4

Associated Gene:

Gene:
COL14A1
Ensembl Gene ID:
ENSAPLG00000008273
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008884
143824288 - 143949881
125594
ENSAPLT00000047738
143824288 - 143950242
125955
ENSAPLT00000036897
143824288 - 143950242
125955
ENSAPLT00000020981
143824288 - 143950114
125827