Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_143938293_143938717_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

143938293 - 143938717

Intron Length:

425

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTAAGTGTG

5'SS Class:

strong_major

3'SS Sequence:

TTTTGTTATCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTTAT

U12 Branch Point Sequence:

CTTTTGTTATCC

Flanking Amino Acid:

PGPKGERGERGDLQSQAMVR

Intron Amino Acid Position:

1616

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.3

0.86

0.9

76.2

39.9

Major BPS

81.3

0.78

1.1

71.7

44.6

Major PPT

84.6

0.78

0.9

77.7

40.7

Minor 5ss

35.9

-1.6

3.3

40.9

45.3

Minor BPS

50.5

-0

2.3

69.18

42.9

Associated Gene:

Gene:

COL14A1

Ensembl Gene ID:

ENSAPLG00000008273

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036897

143824288 - 143950242

125955

ENSAPLT00000020981

143824288 - 143950114

125827

ENSAPLT00000008884

143824288 - 143949881

125594

ENSAPLT00000047738

143824288 - 143950242

125955