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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_143939486_143947343_F

Intron Information:

Intron Rank:
45
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
143939486 - 143947343
Intron Length:
7858

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGCTTT
5'SS Class:
strong_major
3'SS Sequence:
GCCGTTTCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TGGCTCTGATGA
Flanking Amino Acid:
PGQPGRPGERGLPGEKGEKG
Intron Amino Acid Position:
1701

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
78.8
38.3
Major BPS
79
0.72
1
69
38.9
Major PPT
67.5
0.39
0.8
65.1
36.3
Minor 5ss
48.4
-0.1
3.2
72.7
44.5
Minor BPS
42.5
-0.5
1.9
49.94
41

Associated Gene:

Gene:
COL14A1
Ensembl Gene ID:
ENSAPLG00000008273
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036897
143824288 - 143950242
125955
ENSAPLT00000020981
143824288 - 143950114
125827
ENSAPLT00000008884
143824288 - 143949881
125594
ENSAPLT00000047738
143824288 - 143950242
125955