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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_143948469_143949233_F

Intron Information:

Intron Rank:
47
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
143948469 - 143949233
Intron Length:
765

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
CTCCTGTTCGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TGTTGTTCATCT
Flanking Amino Acid:
PSSCAGYGMGGPIPYNGYQS
Intron Amino Acid Position:
1779

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.8
38.7
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
65.3
0.34
1
66.1
33.5
Minor 5ss
29.7
-2.3
2.6
33.4
41.8
Minor BPS
48
-0
2.2
72.71
44.3

Associated Gene:

Gene:
COL14A1
Ensembl Gene ID:
ENSAPLG00000008273
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008884
143824288 - 143949881
125594