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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_143948469_143949788_F

Intron Information:

Intron Rank:
44
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
143948469 - 143949788
Intron Length:
1320

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
GTGGTGGGTTAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATATGAA
U12 Branch Point Sequence:
TTAACCATATGA
Flanking Amino Acid:
PSSCAGYGMGGGYGEPTDQD
Intron Amino Acid Position:
1663

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.8
38.7
Major BPS
66.7
0.41
1
57.8
39
Major PPT
48.8
-0
1.3
48.5
48.3
Minor 5ss
29.7
-2.3
2.6
33.4
41.8
Minor BPS
46
-0.3
2.1
62.19
43.4

Associated Gene:

Gene:
COL14A1
Ensembl Gene ID:
ENSAPLG00000008273
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020981
143824288 - 143950114
125827
ENSAPLT00000047738
143824288 - 143950242
125955
ENSAPLT00000036897
143824288 - 143950242
125955