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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_143949308_143949788_F

Intron Information:

Intron Rank:
48
Intron Class:
major-like
Intron Phase:
3UTR
Intron Coordinates:
143949308 - 143949788
Intron Length:
481

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGATAT
5'SS Class:
major
3'SS Sequence:
GTGGTGGGTTAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATATGAA
U12 Branch Point Sequence:
TTAACCATATGA
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1.2
77.7
33.3
Major BPS
66.7
0.41
1
57.8
39
Major PPT
48.8
-0
1.3
48.5
48.3
Minor 5ss
35
-1.7
3.1
47.6
47.9
Minor BPS
46
-0.3
2.1
62.19
43.4

Associated Gene:

Gene:
COL14A1
Ensembl Gene ID:
ENSAPLG00000008273
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008884
143824288 - 143949881
125594