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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_143949882_143949974_F

Intron Information:

Intron Rank:
45
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
143949882 - 143949974
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCAAC
5'SS Class:
major
3'SS Sequence:
CTTGCTCAACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTCAT
U12 Branch Point Sequence:
TCTTGCTCAACC
Flanking Amino Acid:
QIYDPEDLYDEFTPVREEME
Intron Amino Acid Position:
1694

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
0.9
70.2
35.9
Major BPS
73.5
0.58
1
73.6
32.5
Major PPT
66.8
0.38
1
59.7
40.8
Minor 5ss
34.4
-1.8
2.9
39.8
40.4
Minor BPS
61.3
0.33
2
74.56
42.5

Associated Gene:

Gene:
COL14A1
Ensembl Gene ID:
ENSAPLG00000008273
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047738
143824288 - 143950242
125955
ENSAPLT00000036897
143824288 - 143950242
125955
ENSAPLT00000020981
143824288 - 143950114
125827