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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_143953855_143969952_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
143953855 - 143969952
Intron Length:
16098

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
TTTCTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
ATTTTCTTAACA
Flanking Amino Acid:
EIAAFPRVWTPPKDFRRK*
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.3
76.5
39.2
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
94.6
1
0.6
88.2
29.1
Minor 5ss
42.2
-0.9
2.8
59.5
38.1
Minor BPS
87.1
1.16
0.9
89.52
25.5

Associated Gene:

Gene:
MRPL13
Ensembl Gene ID:
ENSAPLG00000019065
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038808
143953151 - 143985078
31928