About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_143985169_143986527_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
143985169 - 143986527
Intron Length:
1359

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCGCTG
5'SS Class:
major
3'SS Sequence:
CTTCTTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAG
U12 Branch Point Sequence:
ATTTAAGAAAAT
Flanking Amino Acid:
RAEGGAEPAAAVTAANVYKL
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65
0.35
1.3
55.2
49
Major BPS
66.8
0.42
1.5
75.7
36.5
Major PPT
90.9
0.92
0.6
83.9
31.1
Minor 5ss
38.5
-1.3
3.6
55.3
48.9
Minor BPS
40
-0.6
2.5
65.99
43.9

Associated Gene:

Gene:
MTBP
Ensembl Gene ID:
ENSAPLG00000005442
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005660
143985099 - 144015167
30069