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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_143986609_143987111_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
143986609 - 143987111
Intron Length:
503

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCACA
5'SS Class:
strong_major
3'SS Sequence:
TGTCTCTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATTATTTTAAAT
Flanking Amino Acid:
STNTDARTFPACSLAGIPGI
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
80.7
33.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
87
0.83
0.7
84.7
30.2
Minor 5ss
39.7
-1.2
2.8
49.8
46.2
Minor BPS
66.3
0.59
1.4
80.02
35.4

Associated Gene:

Gene:
MTBP
Ensembl Gene ID:
ENSAPLG00000005442
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005660
143985099 - 144015167
30069