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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_143990607_143991142_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
143990607 - 143991142
Intron Length:
536

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAAAAAA
5'SS Class:
major
3'SS Sequence:
TTGTCTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATATAAGTAACT
Flanking Amino Acid:
RGKIQIWERKFASEVRFPEF
Intron Amino Acid Position:
231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
0.9
75.4
28.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
89.8
0.89
0.7
88.4
28.7
Minor 5ss
26.7
-2.7
2.8
30.6
42.8
Minor BPS
47.8
-0
2.3
73.93
42.1

Associated Gene:

Gene:
MTBP
Ensembl Gene ID:
ENSAPLG00000005442
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005660
143985099 - 144015167
30069