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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_143991278_143992037_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
143991278 - 143992037
Intron Length:
760

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTCTT
5'SS Class:
strong_major
3'SS Sequence:
GATCTCATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TTGATCTCATTT
Flanking Amino Acid:
QYRNTDALPEVFHYYGPALE
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.8
83.5
35.1
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
75.1
0.57
0.9
70.7
39.5
Minor 5ss
46.2
-0.4
2.8
67.2
43.9
Minor BPS
48.7
-0
1.8
68.32
43

Associated Gene:

Gene:
MTBP
Ensembl Gene ID:
ENSAPLG00000005442
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005660
143985099 - 144015167
30069