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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_143993357_143994195_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
143993357 - 143994195
Intron Length:
839

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGTTT
5'SS Class:
strong_major
3'SS Sequence:
TGTCATTGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTTAT
U12 Branch Point Sequence:
TTGTCTTATATT
Flanking Amino Acid:
LDQISSLSGKVGALFALPCN
Intron Amino Acid Position:
332

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
81.9
32.1
Major BPS
73.7
0.59
1.2
65.7
43.2
Major PPT
71.4
0.48
1
69.7
41.2
Minor 5ss
42
-0.9
3.5
64.1
47.4
Minor BPS
52.8
0.17
2
74.98
42.6

Associated Gene:

Gene:
MTBP
Ensembl Gene ID:
ENSAPLG00000005442
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005660
143985099 - 144015167
30069