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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_143996901_143998054_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
143996901 - 143998054
Intron Length:
1154

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTAATTTGCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTTCTCCTAATT
Flanking Amino Acid:
LKTNTEETESSFPIPDFIES
Intron Amino Acid Position:
429

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
80
0.75
1
78.6
31
Major PPT
69.2
0.43
1
64.1
41.3
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
67
0.61
1.6
85.92
33.7

Associated Gene:

Gene:
MTBP
Ensembl Gene ID:
ENSAPLG00000005442
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005660
143985099 - 144015167
30069