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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_143998169_143999500_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
143998169 - 143999500
Intron Length:
1332

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTTCATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACAAAT
U12 Branch Point Sequence:
TTTCCTTTCATA
Flanking Amino Acid:
LQASALKEYLKRKELTKQPP
Intron Amino Acid Position:
467

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
89.8
22.2
Major BPS
60.7
0.27
1
65.3
28.1
Major PPT
83.5
0.75
0.7
79.9
25.6
Minor 5ss
39.1
-1.2
2.8
51.7
39.1
Minor BPS
63.4
0.41
1.7
76.34
35.2

Associated Gene:

Gene:
MTBP
Ensembl Gene ID:
ENSAPLG00000005442
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005660
143985099 - 144015167
30069