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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_144001637_144004243_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
144001637 - 144004243
Intron Length:
2607

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATGATTT
5'SS Class:
major
3'SS Sequence:
TCTTTCCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
AACTATTTAAAA
Flanking Amino Acid:
GDLQPLQIPKRENAFLLTPE
Intron Amino Acid Position:
605

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
74.6
36.3
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
90.7
0.92
0.6
88.8
20.5
Minor 5ss
51.7
0.06
2.8
74.3
41.9
Minor BPS
54.4
0.13
1.6
61.29
38.3

Associated Gene:

Gene:
MTBP
Ensembl Gene ID:
ENSAPLG00000005442
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005660
143985099 - 144015167
30069