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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_144004340_144008093_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
144004340 - 144008093
Intron Length:
3754

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTTTT
5'SS Class:
major
3'SS Sequence:
ATTTCTATTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTCTCTCCAATT
Flanking Amino Acid:
KAAGCHYHGLEYCLDNRKAL
Intron Amino Acid Position:
637

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
81.6
33.2
Major BPS
85
0.87
0.8
85.6
23
Major PPT
80.9
0.69
0.8
79
33.5
Minor 5ss
47.4
-0.3
2.8
63.8
41.6
Minor BPS
54.7
0.23
1.9
76.58
40.6

Associated Gene:

Gene:
MTBP
Ensembl Gene ID:
ENSAPLG00000005442
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005660
143985099 - 144015167
30069