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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_144022907_144024245_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
144022907 - 144024245
Intron Length:
1339

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
CCTGTAATTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
CTTCCTGTAATT
Flanking Amino Acid:
LDFGGKDGEIQLDLHSCPKP
Intron Amino Acid Position:
448

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
79.2
33.9
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
74.6
0.55
0.9
70.3
39.1
Minor 5ss
40.9
-1
2.8
58.9
39.3
Minor BPS
56.3
0.28
2
76.64
40.8

Associated Gene:

Gene:
SNTB1
Ensembl Gene ID:
ENSAPLG00000005833
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006055
144020027 - 144134121
114095