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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_144026089_144033907_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
144026089 - 144033907
Intron Length:
7819

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCTGTG
5'SS Class:
major
3'SS Sequence:
AATCCAATTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
GCATATTCAAAT
Flanking Amino Acid:
PLHTYPLLATRLVHSGPGKG
Intron Amino Acid Position:
318

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.53
1.2
67.3
44.3
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
67.7
0.4
1
56.4
42.7
Minor 5ss
40.8
-1
3.4
57.9
46.7
Minor BPS
46.7
-0.1
1.8
60.39
42.6

Associated Gene:

Gene:
SNTB1
Ensembl Gene ID:
ENSAPLG00000005833
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006055
144020027 - 144134121
114095