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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_144061273_144076625_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
144061273 - 144076625
Intron Length:
15353

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTCA
5'SS Class:
strong_major
3'SS Sequence:
CCCATTTTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACGTAAT
U12 Branch Point Sequence:
GTGAACGTAATG
Flanking Amino Acid:
RNMMVSDPENRLIEVHSPDA
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
73.7
33.1
Major BPS
63
0.32
1.2
63.6
40.3
Major PPT
76
0.58
0.8
68.3
37.3
Minor 5ss
38.7
-1.3
2.9
47.9
47.8
Minor BPS
44.2
-0.5
2.2
49.75
44.1

Associated Gene:

Gene:
SNTB1
Ensembl Gene ID:
ENSAPLG00000005833
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006055
144020027 - 144134121
114095