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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_144076843_144133733_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
144076843 - 144133733
Intron Length:
56891

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGACG
5'SS Class:
major
3'SS Sequence:
TATTTTTTTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TTTTCCTTATTT
Flanking Amino Acid:
KRAGKEVLLEVKYMREATPY
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
67
44.2
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
88.3
0.86
0.7
84.4
30.2
Minor 5ss
31.2
-2.2
3.3
39.9
45.9
Minor BPS
81.5
1.07
1.4
95.91
30.5

Associated Gene:

Gene:
SNTB1
Ensembl Gene ID:
ENSAPLG00000005833
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006055
144020027 - 144134121
114095