Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_144148597_144151960_R

Intron Information:

Intron Rank:

138766

Intron Class:

major

Intron Phase:

Intron Coordinates:

144148597 - 144151960

Intron Length:

3364

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTGAGTAAT

5'SS Class:

strong_major

3'SS Sequence:

TCTTAATTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTAAT

U12 Branch Point Sequence:

TTCCTCTTAATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.3

0.83

0.9

83.5

29.9

Major BPS

0.92

0.9

86.2

29.1

Major PPT

84.4

0.77

0.8

81.4

34.9

Minor 5ss

32.4

-2

2.8

43.1

43.9

Minor BPS

75.7

0.89

1.1

84.73

36.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022167

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022977

144147486 - 144152765

5280