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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_144162429_144186739_F

Intron Information:

Intron Rank:
137587
Intron Class:
major
Intron Phase:
Intron Coordinates:
144162429 - 144186739
Intron Length:
24311

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTGCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
TTTTGCTTACAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
76.1
32.7
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
83.8
0.76
0.9
77
36.7
Minor 5ss
33.9
-1.8
2.9
38.9
40.1
Minor BPS
53.1
-0
2.2
68.4
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024090
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045027
144162030 - 144188248
26219