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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_144176675_144177578_F

Intron Information:

Intron Rank:
137580
Intron Class:
major
Intron Phase:
Intron Coordinates:
144176675 - 144177578
Intron Length:
904

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTCG
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATAAA
U12 Branch Point Sequence:
GGTTGCTGAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.7
81.4
33.4
Major BPS
66.3
0.4
1.1
68
34.4
Major PPT
90.4
0.91
0.6
88.5
21
Minor 5ss
40.5
-1.1
2.7
50.4
46
Minor BPS
49.4
-0
2
63.65
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024090
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031575
144176349 - 144188248
11900