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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_144181466_144186739_F

Intron Information:

Intron Rank:
137583
Intron Class:
major
Intron Phase:
Intron Coordinates:
144181466 - 144186739
Intron Length:
5274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGACAACT
5'SS Class:
major
3'SS Sequence:
ATTTTGCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
TTTTGCTTACAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.6
1.1
74.2
36.1
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
83.8
0.76
0.9
77
36.7
Minor 5ss
36.2
-1.6
3
50.2
45.8
Minor BPS
53.1
-0
2.2
68.4
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024090
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031575
144176349 - 144188248
11900
ENSAPLT00000046537
144177048 - 144188248
11201
ENSAPLT00000040201
144177048 - 144188248
11201