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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_14432218_14436768_R

Intron Information:

Intron Rank:
139255
Intron Class:
major
Intron Phase:
Intron Coordinates:
14432218 - 14436768
Intron Length:
4551

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCTCA
5'SS Class:
major
3'SS Sequence:
TATTTTTCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTTTTTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
68.6
39.2
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
89.5
0.89
0.7
84.5
30.1
Minor 5ss
42.7
-0.8
3.1
56.5
47.9
Minor BPS
70.1
0.71
1.5
86.64
33.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022374
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037321
14431526 - 14437325
5800