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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_14432218_14459091_R

Intron Information:

Intron Rank:
139254
Intron Class:
major
Intron Phase:
Intron Coordinates:
14432218 - 14459091
Intron Length:
26874

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAATTGAT
5'SS Class:
major
3'SS Sequence:
TATTTTTCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTTTTTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
74.2
36.3
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
89.5
0.89
0.7
84.5
30.1
Minor 5ss
34
-1.8
3.3
40.9
45.4
Minor BPS
70.1
0.71
1.5
86.64
33.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022374
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023274
14431526 - 14459260
27735