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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_144422700_144424790_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
144422700 - 144424790
Intron Length:
2091

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTACG
5'SS Class:
strong_major
3'SS Sequence:
TTGTATTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTGTATTTCACA
Flanking Amino Acid:
MVGGVGGDVQILNKYDSWIS
Intron Amino Acid Position:
244

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
80.5
33.9
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
81.2
0.7
0.9
76
37.6
Minor 5ss
30.6
-2.2
2.5
34.1
41.4
Minor BPS
56.3
0.19
2
71.81
40.6

Associated Gene:

Gene:
HAS2
Ensembl Gene ID:
ENSAPLG00000006075
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006304
144421013 - 144430090
9078