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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_144424893_144429463_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
144424893 - 144429463
Intron Length:
4571

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTATT
5'SS Class:
strong_major
3'SS Sequence:
GTCTTTCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
TACTCCTTAACC
Flanking Amino Acid:
ALGRSVDYVQVCDSDTVLDP
Intron Amino Acid Position:
210

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.94
0.9
90.9
28.7
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
81.7
0.71
0.8
77.2
31.6
Minor 5ss
40.3
-1.1
3.2
59.2
45.4
Minor BPS
84.9
1.07
1
83.72
35.5

Associated Gene:

Gene:
HAS2
Ensembl Gene ID:
ENSAPLG00000006075
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006304
144421013 - 144430090
9078