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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_144470327_144496283_R

Intron Information:

Intron Rank:
155107
Intron Class:
major
Intron Phase:
Intron Coordinates:
144470327 - 144496283
Intron Length:
25957

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCTGT
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAA
U12 Branch Point Sequence:
CTCTCTTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71.5
41.1
Major BPS
74.2
0.6
0.9
75.7
28
Major PPT
87.9
0.85
0.7
82.7
25.9
Minor 5ss
45.7
-0.5
2.9
61.8
44.9
Minor BPS
63.9
0.43
1.7
70.65
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030971
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032497
144470226 - 144547212
76987