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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_144510232_144516759_F

Intron Information:

Intron Rank:
146433
Intron Class:
major
Intron Phase:
Intron Coordinates:
144510232 - 144516759
Intron Length:
6528

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAC
U12 Branch Point Sequence:
GTTTTGTTACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
87
27.7
Major BPS
71.4
0.53
1.2
63.4
44
Major PPT
89.5
0.89
0.7
87.9
29.5
Minor 5ss
38.8
-1.3
3.4
55
43.6
Minor BPS
54.4
0.22
2.3
79.89
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028906
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024645
144509540 - 144520649
11110