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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_144516882_144519170_F

Intron Information:

Intron Rank:
146434
Intron Class:
major
Intron Phase:
Intron Coordinates:
144516882 - 144519170
Intron Length:
2289

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTATGTGGG
5'SS Class:
major
3'SS Sequence:
CCTTATCACCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
CTTTCCTTATCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.1
61.8
42.9
Major BPS
84.4
0.85
1
84
34.5
Major PPT
70.2
0.45
0.9
61.9
38.7
Minor 5ss
40.6
-1
3.1
52.8
44.7
Minor BPS
76
0.81
1.6
83.19
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028906
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024645
144509540 - 144520649
11110