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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_144519332_144520377_F

Intron Information:

Intron Rank:
146435
Intron Class:
major
Intron Phase:
Intron Coordinates:
144519332 - 144520377
Intron Length:
1046

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCTTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCCT
U12 Branch Point Sequence:
CTTTCCTTTCCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
37
Major BPS
34.7
-0.9
4.2
75
39.9
Major PPT
79.5
0.66
0.9
76.6
31.9
Minor 5ss
26.2
-2.7
2.9
30.9
42.7
Minor BPS
47.7
-0.1
3.6
84
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028906
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024645
144509540 - 144520649
11110