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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_144548822_144575727_F

Intron Information:

Intron Rank:
128334
Intron Class:
major
Intron Phase:
Intron Coordinates:
144548822 - 144575727
Intron Length:
26906

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGAAGC
5'SS Class:
major
3'SS Sequence:
CATTCCCTACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TCTCTCTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
65.9
40.1
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
71.4
0.48
0.9
63.3
37.8
Minor 5ss
27
-2.6
3
34.1
41.6
Minor BPS
59.5
0.38
1.7
76.4
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019113
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043822
144548155 - 144575783
27629