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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_144567480_144575727_F

Intron Information:

Intron Rank:
128326
Intron Class:
major
Intron Phase:
Intron Coordinates:
144567480 - 144575727
Intron Length:
8248

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
CATTCCCTACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TCTCTCTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
77.7
33.5
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
71.4
0.48
0.9
63.3
37.8
Minor 5ss
40
-1.1
2.7
42.4
44.3
Minor BPS
59.5
0.38
1.7
76.4
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019113
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017733
144567285 - 144577884
10600