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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_144575837_144577803_F

Intron Information:

Intron Rank:
128327
Intron Class:
major
Intron Phase:
Intron Coordinates:
144575837 - 144577803
Intron Length:
1967

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTGTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
GTGTCCATAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
83.9
30.3
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
86.6
0.82
0.9
84.6
36
Minor 5ss
36.5
-1.5
2.9
49.7
46.6
Minor BPS
60.5
0.33
1.8
70.88
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019113
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022972
144575728 - 144582008
6281
ENSAPLT00000017733
144567285 - 144577884
10600