About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_144726174_144728098_R

Intron Information:

Intron Rank:
137217
Intron Class:
major
Intron Phase:
Intron Coordinates:
144726174 - 144728098
Intron Length:
1925

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCAAG
5'SS Class:
major
3'SS Sequence:
GCTCAACTTATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTGTGCTCAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
70.7
41.1
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
66.4
0.37
0.9
58.2
37.2
Minor 5ss
38.8
-1.3
2.8
48.4
47.4
Minor BPS
63.9
0.52
2
84.2
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021320
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030511
144726167 - 144728769
2603