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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_144728536_144728723_R

Intron Information:

Intron Rank:
137218
Intron Class:
major
Intron Phase:
Intron Coordinates:
144728536 - 144728723
Intron Length:
188

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
ATTCACTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTCCCTGAGCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
84.2
26.3
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
81.4
0.71
0.8
77.7
35.6
Minor 5ss
36.1
-1.6
3.3
49.4
41.3
Minor BPS
64
0.44
1.7
78.45
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021320
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030511
144726167 - 144728769
2603