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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_144740093_144753727_R

Intron Information:

Intron Rank:
149917
Intron Class:
major
Intron Phase:
Intron Coordinates:
144740093 - 144753727
Intron Length:
13635

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTATC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTACTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
87
27.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
82.9
0.74
0.8
81.2
36.5
Minor 5ss
46.4
-0.4
2.5
62.6
42.2
Minor BPS
67.5
0.63
1.6
84.37
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028220
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027290
144740011 - 144760265
20255