Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_1447423_1447567_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1447423 - 1447567

Intron Length:

145

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTAAGGCTT

5'SS Class:

strong_major

3'SS Sequence:

TTCTGCCCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTCAC

U12 Branch Point Sequence:

GGATGCTCACGG

Flanking Amino Acid:

VTGSQDHTLRVFRLEDSCCL

Intron Amino Acid Position:

1005

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.3

0.74

73.4

43.3

Major BPS

69.8

0.49

1.1

71.3

36.7

Major PPT

75.7

0.58

0.8

69.7

31.1

Minor 5ss

36.2

-1.6

3.5

48.3

47.3

Minor BPS

36.8

-1.1

2.2

37.89

44.3

Associated Gene:

Gene:

SCAP

Ensembl Gene ID:

ENSAPLG00000014099

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014751

1445644 - 1468963

23320