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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_144753764_144760125_R

Intron Information:

Intron Rank:
149918
Intron Class:
major
Intron Phase:
Intron Coordinates:
144753764 - 144760125
Intron Length:
6362

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTCATT
5'SS Class:
major
3'SS Sequence:
CTCTGCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATAAAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.1
74.8
41.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
80.4
0.68
0.8
76.7
32
Minor 5ss
44.3
-0.6
3.2
66.6
44.3
Minor BPS
44.3
-0.4
2
61.03
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028220
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027290
144740011 - 144760265
20255