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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_1448557_1448812_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1448557 - 1448812
Intron Length:
256

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTACT
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTGAC
U12 Branch Point Sequence:
CTGCTGTTGACA
Flanking Amino Acid:
GITALVFLNNRIVAARLNGS
Intron Amino Acid Position:
921

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.8
82.2
30
Major BPS
71.3
0.53
1.1
63.1
44.5
Major PPT
78.8
0.65
0.8
70.6
35.5
Minor 5ss
39
-1.2
2.7
51.8
44.8
Minor BPS
47.5
-0.2
2.1
58.73
41.5

Associated Gene:

Gene:
SCAP
Ensembl Gene ID:
ENSAPLG00000014099
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014751
1445644 - 1468963
23320