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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_144873426_144874840_F

Intron Information:

Intron Rank:
136211
Intron Class:
major
Intron Phase:
Intron Coordinates:
144873426 - 144874840
Intron Length:
1415

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAATGCA
5'SS Class:
major
3'SS Sequence:
TTTCTCATCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
CCTTTCTCATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.3
68.4
36.8
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
83.5
0.75
0.7
81.8
28.5
Minor 5ss
27.7
-2.6
3
33.4
41.6
Minor BPS
53.1
0.18
1.9
71.23
45.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023393
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039563
144869769 - 144888652
18884
ENSAPLT00000035597
144869769 - 144888652
18884
ENSAPLT00000029863
144869769 - 144890795
21027